Abstract: With the in-depth development of the new round of technological revolution and industrial change, scientific and technological innovation has become the main battlefield of the great power game. The state-owned mining enterprises are the mainstay in the field of mineral resources development and utilization, and there are certain deficiencies and shortcomings in their scientific research management. This paper analyzes the basic connotation and responsibilities of scientific research management, explains its systematic, synergistic, subjective initiative and other significant features from a broad scope, and analyzes in-depth the scientific research management of state-owned mining enterprises in the scientific research management of the existence of scientific research management department positioning bias, scientific research management personnel requirements are unclear, the innovation incentive mechanism is imperfect, the talent team building is not sound, the management mode is traditional, scientific and technological report management needs to be optimized, and other specific problems, and puts forward optimization countermeasures for the existing deficiencies. Optimization countermeasures are proposed for the existing deficiencies, which provide reference for state-owned mining enterprises to improve the scientific and technological innovation system and enhance the level of scientific and technological research management: ① improve the organizational management system, set up three management levels, namely, functional level, departmental level and research office level, form a synergistic working mechanism between each level, establish a perfect management system, and put forward specific job requirements for managers. ② Strengthen the construction of talent team building, cultivate a group of high-quality talents with reasonable age structure, implement the training program for strategic scientists, leading talents and outstanding engineers, and formulate appropriate training programs for talents at different levels. ③ Improve the innovation incentive mechanism, through the project performance, dividend incentives, equity incentives and other ways to achieve economic incentives, at the same time pay attention to the different incentives applicable to the crowd. ④ Build a scientific and technological information service system, to achieve the whole process of scientific research management and tracking, do a good job of digitization of the archives, and at the same time, do a good job of scientific and technological report management and reuse.