Abstract: Reconstructing the nature reserve system with national parks as the main body is of great strategic significance for safeguarding national ecological security, building ecological civilization and beautiful China.At present, it is an important period to reconstruct the natural protection area system from three aspects of planning, system and function.It is appropriate to understand and master the guiding ideology, control rules and working process of the reconstruction of the natural protection area system, actively strengthen the coordination of mineral resources planning and jointly promote the formulation of rules for the development and utilization of eco-friendly resources, so as to coordinate the ecological security and resource security.It is of great practical significance to dispose the mining rights involved in protected areas.This paper puts forward some suggestions on the adjustment of the scope of protected areas, the match of planning, the impact assessment of resources security, and the hierarchical, classified and differentiated disposal.